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Gynecological SurgeryVAGIBIOTENCT04301401

Assessment of Changes in Vaginal Microbiota Profiles Before and After Vaginal Urogynecologic Surgery

A study testing Vaginal swabs, Stool samples and Urine samples in people with Gynecological Surgery, run by Centre Hospitalier Universitaire de Nīmes at 1 site in France.

Completed

Finished. The study has ended and is not enrolling. Results may be posted on the official record.

Official record
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Trial summary

Several studies have shown interactions between vaginal microbiota and post-surgical evolution. A study conducted by our team showed a tendency for patients with complications to have a greater diversity of vaginal microbiota. Read more about this study

Who is it for?
Ages 18 years and older, women only
Conditions the study is for
Gynecological Surgery
What is being tested?
Vaginal swabs, Stool samples and Urine samples
Could I receive a placebo?
No, everyone receives an active treatment
How many people
60 participants
Where
1 siteFrance
Study dates
1 Mar 2020to 10 Oct 2023
Phase
Interventional
Are there results?
None posted in the registry

Key requirements

Who can take part, as listed by the sponsor. Only the study team can confirm whether you are eligible, so take this list to your doctor.

  • Ages 18 years and older
  • Women only
  • No healthy volunteers
  • Adult, Older adult

Who may be able to join

  • All Caucasian menopausal women (not taking hormone substitutes)
  • Due to undergo transvaginal surgery (as a cure for pelvic organ prolapse or stress urinary incontinence surgery) from the Gynecology departments of Nantes and Nîmes University Hospitals.
  • Patients must be covered by a health insurance policy
  • Patients must have given written, informed consent.

Who cannot join

  • Patients on recent (<1 month) immunosuppressive therapy,
  • Patients with ongoing antibiotic therapy,
  • Patients with chronic vaginosis,
  • Patients on hormone replacement therapy
  • Patients who have had previous transvaginal mesh surgery.
  • Patients taking part in another category 1 study for research involving human subjects.
Show all 9Show fewer
  • Patients in an exclusion period determined by another study
  • Patients under court custody, guardianship or curatorship
  • Patients for whom it has been impossible to give clear information

Trial locations and contacts

1 site in 1 country.

France1 site
  • Centre Hospitalier Universitaire

    Nîmes, Gard, 30000

Other trials in France

About this study

Several studies have shown interactions between vaginal microbiota and post-surgical evolution. A study conducted by our team showed a tendency for patients with complications to have a greater diversity of vaginal microbiota. The main objective of the proposed study will therefore be to evaluate the vaginal, urinary and digestive microbiota modifications during and after vaginal surgery and to correlate them with the symptoms of the urogynecological sphere.

Read the detailed description

In gynecological surgery, surgical site infections are a common complication. Gynecological surgery and, more specifically, vaginal surgery leads to a high risk of infection not only due to its " clean-contaminated " nature related to the proximity of the vagina but also due to the use of a transvaginal mesh or suburetal sling. The germs most commonly found at the origin of a surgical site infection are germs forming part of the vaginal flora.

Furthermore, in the field of pelvic organ prolapse surgery, certain specific complications such as mesh retraction and mesh exposure may be related to infection due to bacterial colonisation.

The vaginal ecosystem contains a large quantity of bacteria, the commonest of which are lactobacilli. This ecosystem varies in women depending on their sexuality, hormonal impregnation, tobacco consumption or hygiene.It has been demonstrated that the microbiota can be divided into 7 classes depending on the predominant types of germ. It has also been shown that an imbalance in vaginal flora could be responsible for infections of the upper genital tract, obstetric complications or even the transmission of sexually transmissible diseases.

Several studies have shown interactions between the microbiota and post surgical evolution. A recent study carried out at the Gynecology and Obstetrics department of Nîmes University Hospital (Veit Rubin et al, NAU 2019) also investigated the relationship between vaginal microbiota and the onset of postoperative complications in transvaginal mesh surgery. This retrospective study also found that patients with complications tended to have a greater diversity of microbiota. Furthermore, certain species of bacteria (Veillonella spp) seemed to be commoner in patients with complications. However, this was a low-powered retrospective study with few participants and the results therefore need to be confirmed.

Our hypothesis is that the vaginal microbiota may be modified by a surgical act with a vaginal approach. There are very few studies on vaginal microbiota and so far no studies have evaluated the potential impact of a transvaginal surgery on vaginal microbiota.

Our study may help to better understand the relationship between the vaginal microbiota and the postoperative evolution of patients.These possible modifications in vaginal microbiota might be predictive of the symptomatology of patients benefitting from transvaginal surgery and play a role in the the post-operative evolution of these patients.

Being tested
Vaginal swabs, Stool samples, Urine samples
Keywords
Microbiota, vagina, prolapse, transvaginal surgery, surgical site infection
Medical subject headings
Prolapse, Surgical Wound Infection

What participants receive

What participants receive. In a randomised study each person is assigned to one group by chance.

  • Vaginal swabsOther

    On the day of the surgical intervention, vaginal swabs will be taken at various stages of surgery: before vaginal disinfection/draping, directly after disinfection/draping, 1 hour after disinfection, 6 weeks after surgery and 12 months after surgery.

  • Stool samplesOther

    Stool samples will also be taken (and collected in a pot devoted to coproculture with an airtight opaque bag given to the patient) at the inclusion visit on the day before surgery and also 6 weeks after surgery (in a second pot with an airtight opaque bag given to the patient at the time of being discharged).

  • Urine samplesOther

    Urine samples will also be taken before surgery and 6 weeks after surgery.

Study groups in NCT04301401
Study groupRoleWhat they receive
Patients being evaluated for changes in microbiotaExperimentalPatients being evaluated for changes in vaginal microbiota following transvaginal surgery.
Receives: Other: Vaginal swabs; Other: Stool samples; Other: Urine samples

What is being measured

The primary outcome is the main question the study is designed to answer.

  1. Classes of vaginal flora before surgery

    A vaginal swab will be taken before surgery and the sample will be analyzed by DNA sequencing in order to classify the microbiota into community state types.

    Measured: Day 1

  2. Classes of vaginal flora 6 weeks after surgery

    A vaginal swab will be taken 6 weeks after surgery and the sample will be analyzed by DNA sequencing in order to classify the microbiota into community state types.

    Measured: Day 42

Secondary outcomes (39)
  1. Classes of vaginal flora 12 mois after surgery

    A vaginal swab will be taken 12 months after surgery and the sample will be analyzed by DNA sequencing in order to classify the microbiota into community state types.

    Measured: Month 12

  2. Alphadiversity of vaginal flora before preparation for surgery measured with the Shannon index

    A vaginal swab will be taken before any preparation for surgery has begun and the alphadiversity of the microbiota will be measured according to the Shannon index in Taxonomic Operational Units

    Measured: Day 1

  3. Betadiversity of vaginal flora before preparation for surgery measured with the Bray-Curtis index

    A vaginal swab will be taken before any preparation for surgery has begun and the betadiversity of the microbiota will be measured according to the Bray-Curtis index in Taxonomic Operational Units

    Measured: Day 1

  4. Alphadiversity of vaginal flora directly after disinfection and draping, measured with the Shannon index

    A vaginal swab will be taken directly after disinfection and draping and the alphadiversity of the microbiota will be measured according to the Shannon index in Taxonomic Operational Units.

    Measured: Day 1

  5. Betadiversity of vaginal flora directly after disinfection and draping, measured with the Bray-Curtis index

    A vaginal swab will be taken directly after disinfection and draping and the betadiversity of the microbiota will be measured according to the Bray-Curtis index in Taxonomic Operational Units.

    Measured: Day 1

  6. Alphadiversity of vaginal flora one hour after disinfection and draping, measured with the Shannon index

    A vaginal swab will be taken one hour after disinfection and draping and the alphadiversity of the microbiota will be measured according to the Shannon index in Taxonomic Operational Units.

    Measured: Day 1

  7. Betadiversity of vaginal flora one hour after disinfection and draping, measured with the Bray-Curtis index

    A vaginal swab will be taken one hour after disinfection and draping and the betadiversity of the microbiota will be measured according to the Bray-Curtis index in Taxonomic Operational Units.

    Measured: Day 1

  8. Alphadiversity of vaginal flora six weeks after surgery, measured with the Shannon index

    A vaginal swab will be taken six weeks after surgery and the alphadiversity of the microbiota will be measured according to the Shannon index in Taxonomic Operational Units.

    Measured: Day 42

  9. Betadiversity of vaginal flora six weeks after surgery, measured with the Bray-Curtis index

    A vaginal swab will be taken six weeks after surgery and the betadiversity of the microbiota will be measured according to the Bray-Curtis index in Taxonomic Operational Units.

    Measured: Day 42

  10. Alphadiversity of vaginal flora twelve months after surgery, measured with the Shannon index

    A vaginal swab will be taken twelve months after surgery and the alphadiversity of the microbiota will be measured according to the Shannon index in Taxonomic Operational Units.

    Measured: Month 12

  11. Betadiversity of vaginal flora twelve months after surgery, measured with the Bray-Curtis index

    A vaginal swab will be taken twelve months after surgery and the betadiversity of the microbiota will be measured according to the Bray-Curtis index in Taxonomic Operational Units.

    Measured: Month 12

  12. Prolapse. Feeling a bulge six weeks after surgery

    Yes/No. If present, this will be classified according to the International Continence Society-International Urogynecological Association classification

    Measured: Day 42

  13. Prolapse. Feeling a bulge twelve months after surgery

    Yes/No. If present, this will be classified according to the International Continence Society-International Urogynecological Association classification

    Measured: Month 12

  14. Dyspareunia six weeks after surgery

    Yes/no. If present, this will be rated according to the International Continence Society-International Urogynecological Association classification.

    Measured: Day 42

  15. Dyspareunia 12 months after surgery

    Yes/No. If present, this will be rated according to the International Continence Society-International Urogynecological Association classification.

    Measured: Month 12

  16. Pain six weeks after surgery

    The patient will be asked to evaluate pain according to a visual analogue scale ranging from 0 (no pain) to 10 (extremely painful).

    Measured: Day 42

  17. Pain 12 months after surgery

    The patient will be asked to evaluate pain according to a visual analogue scale ranging from 0 (no pain) to 10 (extremely painful).

    Measured: Month 12

  18. Urinary incontinence upon effort six weeks after surgery

    Yes/No. If present, this will be rated according to the International Continence Society-International Urogynecological Association classification.

    Measured: Day 42

  19. Urinary incontinence upon effort 12 months after surgery

    Yes/No.If present, this will be classified according to the International Continence Society-International Urogynecological Association classification

    Measured: Month 12

  20. Need to urinate urgently six weeks after surgery

    Yes/No.If present, this will be classified according to the International Continence Society-International Urogynecological Association classification.

    Measured: Day 42

  21. Need to urinate urgently 12 months after surgery

    Yes/No.If present, this will be classified according to the International Continence Society-International Urogynecological Association classification.

    Measured: Month 12

  22. Dysuria 6 weeks after surgery

    Yes/No.If present, this will be classified according to the International Continence Society-International Urogynecological Association classification.

    Measured: Day 42

  23. Dysuria 12 months after surgery

    Yes/No.If present, this will be classified according to the International Continence Society-International Urogynecological Association classification.

    Measured: Month 12

  24. Constipation 6 weeks after surgery

    Yes/No. If present, this will be classified according to the International Continence Society-International Urogynecological Association classification.

    Measured: Day 42

  25. Constipation 12 months after surgery

    Yes/No. If present, this will be classified according to the International Continence Society-International Urogynecological Association classification.

    Measured: Month 12

  26. Anal incontinence 6 weeks after surgery

    Yes/No. If present, this will be classified according to the International Continence Society-International Urogynecological Association classification.

    Measured: Day 42

  27. Anal incontinence 12 months after surgery

    Yes/No. If present, this will be classified according to the International Continence Society-International Urogynecological Association classification.

    Measured: Month 12

  28. Presence or absence of complications 6 weeks after surgery

    Yes/No. If present, these will be rated according to the Clavien Dindo classification. The Clavien Dindo classification is a scale with grades ranging from 1 to 5 in which Grade 1 = any deviation from the normal postoperative course without the need for pharmacological treatment or surgical, endoscopic and radiological interventions. Allowed therapeutic regimens are: drugs as antiemetics, antipyretics, analgetics, diuretics and electrolytes and physiotherapy. This grade also includes wound infections opened at the bedside. Grade 5 = death of the patient.

    Measured: Day 42

  29. Presence or absence of complications 12 months after surgery

    Yes/No. If present, these will be rated according to the Clavien Dindo classification.The Clavien Dindo classification is a scale with grades ranging from 1 to 5 in which Grade 1 = any deviation from the normal postoperative course without the need for pharmacological treatment or surgical, endoscopic and radiological interventions. Allowed therapeutic regimens are: drugs as antiemetics, antipyretics, analgetics, diuretics and electrolytes and physiotherapy. This grade also includes wound infections opened at the bedside. Grade 5 = death of the patient.

    Measured: Month 12

  30. Presence or absence of complications related to a prosthesis 6 weeks after surgery

    Yes/No. If present, these will be rated according to the International Continence Society-International Urogynecological Association classification

    Measured: Day 42

  31. Presence or absence of complications related to a prosthesis 12 months after surgery

    Yes/No. If present, these will be rated according to the International Continence Society-International Urogynecological Association classification.

    Measured: Month 12

  32. Presence or absence of infection at the operating site 6 weeks after surgery

    Yes/No

    Measured: Day 42

  33. Presence or absence of infection at the operating site 12 months after surgery

    Yes/No

    Measured: Month 12

  34. Urine sample before surgery

    A urine sample will be collected from the patient before surgery and stored in a sterile pot at -80° at the Biological resource Centre at Nîmes or Nantes University Hospitals.

    Measured: Day 1

  35. Urine sample after vaginal disinfection and surgical draping.

    A urine sample will be collected from the patient before surgery but after vaginal disinfection and surgical draping, and stored in a sterile pot at -80° at the Biological resource Centre at Nîmes or Nantes University Hospitals.

    Measured: Day 1

  36. Urine sample 6 weeks after surgery six weeks after surgery

    A urine sample will be collected from the patient 6 weeks after surgery and stored in a sterile pot at -80° at the Biological resource Centre at Nîmes or Nantes University Hospitals.

    Measured: Day 42

  37. Urine sample 12 months after surgery

    A urine sample will be collected from the patient 12 months after surgery and stored in a sterile pot at -80° at the Biological resource Centre at Nîmes or Nantes University Hospitals.

    Measured: Month 12

  38. Stool sample before surgery

    The day before surgery, at the inclusion visit, a stool sample will be collected in a sterile pot and stored at -80° at the Biological resource Centre at Nîmes or Nantes University Hospitals.

    Measured: Day 0

  39. Stool sample 6 weeks after surgery

    Six weeks after surgery, a stool sample will be collected in a sterile pot and stored at -80° at the Biological resource Centre at Nîmes or Nantes University Hospitals.

    Measured: Day 42

Timeline

From the start of the study to its completion; the mark is today. Estimated dates are the sponsor’s plan.

  1. First posted10 Mar 2020
  2. Study start1 Mar 2020
  3. Primary completion18 Jan 2023
  4. Study completion10 Oct 2023

Resources

More details

For doctors and researchers: how the study is designed, who runs it, and its registry IDs.

Study design
Study type
Interventional
Phase
Phase N/A
Primary purpose
Prevention
Allocation
Not applicable
Intervention model
Single group
Masking
None (open label)
Enrolment
60 participants (actual)
IDs, dates and publications
ClinicalTrials.gov ID
NCT04301401
Sponsor's protocol ID
NIMAO/2019-01/LA-01
Acronym
VAGIBIOTE
Status last verified
Jan 2026
First submitted
6 Mar 2020
Last updated
13 Jan 2026
Results posted
No
FDA-regulated drug
No
FDA-regulated device
No

Publications

  • Zhang Y, Allegre L, Salipante F, Morsli M, Thubert T, Lavigne JP, Dunyach-Remy C, de Tayrac R. Impact of surgical field disinfection on vaginal microbiome in transvaginal urogynecological surgery: a prospective cohort study. Antimicrob Resist Infect Control. 2025 Aug 26;14(1):102. doi: 10.1186/s13756-025-01622-6.

    PubMed 40859385

Questions about this trial

What is this clinical trial studying?

A study testing Vaginal swabs, Stool samples and Urine samples in people with Gynecological Surgery, run by Centre Hospitalier Universitaire de Nīmes at 1 site in France.

The full registered description is in the About this study section and the official record.

Who may be eligible to take part?

The sponsor lists 4 inclusion and 9 exclusion criteria. Eligibility is decided by the study team after screening, so read the full criteria and contact a listed site.

Is this clinical trial currently recruiting?

The record says: finished, as of the sponsor's last update on 13 Jan 2026. Status can change between updates, so confirm with the study contact before making plans.

Where is the study taking place?

The record lists 1 site in France. Whether a site is taking part right now should be confirmed with that site. See every site.

What are the possible benefits and risks?

They depend on the study and the treatment, and no study can promise a benefit. The study team explains the known risks during informed consent, before anyone joins; the record itself does not list them.

Are results available for this study?

The study is completed, but results are not available in the source record. That does not mean the treatment did or did not work.

How can a doctor refer a patient or contact the research team?

The record lists no contact. The official record names the sponsor, who can be asked directly. AzTrials does not enrol participants or take referrals.

What does the primary outcome measure?

Classes of vaginal flora before surgery (time frame: Day 1). The study lists 2 primary outcomes in all. It is what the study was designed to measure, not a finding.

Where can I read the original study information?

On the ClinicalTrials.gov record for NCT04301401, which also lists 1 linked publication.

Does a listing mean the treatment is approved or proven to work?

No. A listing means the study is registered. It does not show that the treatment is safe, works, or is approved by a regulator.

How often is this information updated?

AzTrials copies changed records from ClinicalTrials.gov every night and reloads the whole registry every week. The sponsor last updated this record on 13 Jan 2026.

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